J4_6VMI_003

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCCUG*CAUCAC*GCACCG*CUCCAC

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VMI|1|A|G|2492
6VMI|1|A|C|2493
6VMI|1|A|C|2494
6VMI|1|A|U|2495
6VMI|1|A|G|2496
*
6VMI|1|A|C|2508
6VMI|1|A|A|2509
6VMI|1|A|U|2510
6VMI|1|A|C|2511
6VMI|1|A|A|2512
6VMI|1|A|C|2513
*
6VMI|1|A|G|2537
6VMI|1|A|C|2538
6VMI|1|A|A|2539
6VMI|1|A|C|2540
6VMI|1|A|C|2541
6VMI|1|A|G|2542
*
6VMI|1|A|C|2637
6VMI|1|A|U|2638
6VMI|1|A|C|2639
6VMI|1|A|C|2640
6VMI|1|A|A|2641
6VMI|1|A|C|2642

Current chains

Chain A

16s rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial