J4_6VMI_006

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

(P5P)(Y5P)(Y5P)(P5P)*(Y5P)(P5P)(Y5P)*(P5P)(P5P)(P5P)(P5P)(Y5P)(P5P)*(Y5P)(Y5P)

Length

15 nucleotides

Bulged bases

6VMI|1|A7|Y5P|8, 6VMI|1|A7|Y5P|44

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VMI|1|A7|P5P|7
6VMI|1|A7|Y5P|8
6VMI|1|A7|Y5P|9
6VMI|1|A7|P5P|10
*
6VMI|1|A7|Y5P|22
6VMI|1|A7|P5P|23
6VMI|1|A7|Y5P|24
*
6VMI|1|A7|P5P|40
6VMI|1|A7|P5P|41
6VMI|1|A7|P5P|42
6VMI|1|A7|P5P|43
6VMI|1|A7|Y5P|44
6VMI|1|A7|P5P|45
*
6VMI|1|A7|Y5P|60
6VMI|1|A7|Y5P|61

Current chains

Chain A7

P-site and E-site tRNA

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain AF

28S ribosomal protein S7, mitochondrial