J4_6VU3_010

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6VU3|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VU3_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0703

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VU3|1|a|G|1310
6VU3|1|a|G|1311
6VU3|1|a|U|1312
6VU3|1|a|U|1313
6VU3|1|a|C|1314
*
6VU3|1|a|G|1338
6VU3|1|a|G|1339
6VU3|1|a|U|1340
6VU3|1|a|G|1341
6VU3|1|a|A|1342
6VU3|1|a|G|1343
*
6VU3|1|a|C|1404
6VU3|1|a|U|1405
*
6VU3|1|a|A|1597
6VU3|1|a|A|1598
6VU3|1|a|U|1599
6VU3|1|a|C|1600
6VU3|1|a|G|1601
6VU3|1|a|U|1602
6VU3|1|a|A|1603
6VU3|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34