J4_6VWL_005

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6VWL|1|2|U|653, 6VWL|1|2|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWL_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5485

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6VWL|1|2|C|601
6VWL|1|2|A|602
6VWL|1|2|A|603
6VWL|1|2|G|604
*
6VWL|1|2|C|624
6VWL|1|2|G|625
6VWL|1|2|A|626
6VWL|1|2|A|627
6VWL|1|2|G|628
*
6VWL|1|2|C|635
6VWL|1|2|G|636
6VWL|1|2|A|637
6VWL|1|2|G|638
*
6VWL|1|2|C|650
6VWL|1|2|G|651
6VWL|1|2|U|652
6VWL|1|2|U|653
6VWL|1|2|A|654
6VWL|1|2|A|655
6VWL|1|2|G|656

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15