J4_6VWL_014
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CAG*CGUGGUC*GU
- Length
- 16 nucleotides
- Bulged bases
- 6VWL|1|5|G|47, 6VWL|1|5|U|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6VWL_014 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.3103
- The information below is about J4_6UFM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
6VWL|1|5|A|7
6VWL|1|5|U|8
6VWL|1|5|A|9
6VWL|1|5|G|10
*
6VWL|1|5|C|25
6VWL|1|5|A|26
6VWL|1|5|G|27
*
6VWL|1|5|C|43
6VWL|1|5|G|44
6VWL|1|5|U|45
6VWL|1|5|G|46
6VWL|1|5|G|47
6VWL|1|5|U|48
6VWL|1|5|C|49
*
6VWL|1|5|G|65
6VWL|1|5|U|66
Current chains
- Chain 5
- tRNAPhe
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Z
- 50S ribosomal protein L33
Coloring options: