J4_6VWL_015

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6VWL|1|2|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWL|1|2|C|1833
6VWL|1|2|U|1834
6VWL|1|2|G|1835
*
6VWL|1|2|C|1905
6VWL|1|2|G|1906
*
6VWL|1|2|C|1924
6VWL|1|2|C|1925
6VWL|1|2|U|1926
6VWL|1|2|A|1927
6VWL|1|2|A|1928
6VWL|1|2|G|1929
6VWL|1|2|G|1930
6VWL|1|2|U|1931
6VWL|1|2|A|1932
6VWL|1|2|G|1933
*
6VWL|1|2|C|1967
6VWL|1|2|G|1968
6VWL|1|2|A|1969
6VWL|1|2|A|1970
6VWL|1|2|U|1971
6VWL|1|2|G|1972

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2