J4_6VWM_003
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 6VWM|1|1|A|572, 6VWM|1|1|C|576, 6VWM|1|1|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6VWM|1|1|C|569
6VWM|1|1|G|570
6VWM|1|1|U|571
6VWM|1|1|A|572
6VWM|1|1|A|573
6VWM|1|1|A|574
6VWM|1|1|G|575
6VWM|1|1|C|576
6VWM|1|1|G|577
*
6VWM|1|1|C|764
6VWM|1|1|G|765
6VWM|1|1|A|766
6VWM|1|1|A|767
6VWM|1|1|A|768
6VWM|1|1|G|769
*
6VWM|1|1|C|810
6VWM|1|1|C|811
6VWM|1|1|G|812
6VWM|1|1|U|813
6VWM|1|1|A|814
6VWM|1|1|A|815
6VWM|1|1|A|816
6VWM|1|1|C|817
6VWM|1|1|G|818
6VWM|1|1|A|819
6VWM|1|1|U|820
6VWM|1|1|G|821
*
6VWM|1|1|C|879
6VWM|1|1|C|880
6VWM|1|1|G|881
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 30S ribosomal protein S8
- Chain k
- 30S ribosomal protein S12
- Chain n
- 30S ribosomal protein S15
- Chain p
- 30S ribosomal protein S17
- Chain t
- 30S ribosomal protein S21
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