J4_6VWM_005

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6VWM|1|2|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWM_005 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.5337

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6VWM|1|2|C|601
6VWM|1|2|A|602
6VWM|1|2|A|603
6VWM|1|2|G|604
*
6VWM|1|2|C|624
6VWM|1|2|G|625
6VWM|1|2|A|626
6VWM|1|2|A|627
6VWM|1|2|G|628
*
6VWM|1|2|C|635
6VWM|1|2|G|636
6VWM|1|2|A|637
6VWM|1|2|G|638
*
6VWM|1|2|C|650
6VWM|1|2|G|651
6VWM|1|2|U|652
6VWM|1|2|U|653
6VWM|1|2|A|654
6VWM|1|2|A|655
6VWM|1|2|G|656

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15