J4_6VWM_007

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6VWM|1|2|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VWM_007 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1411

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VWM|1|2|G|1310
6VWM|1|2|G|1311
6VWM|1|2|U|1312
6VWM|1|2|U|1313
6VWM|1|2|C|1314
*
6VWM|1|2|G|1338
6VWM|1|2|G|1339
6VWM|1|2|U|1340
6VWM|1|2|G|1341
6VWM|1|2|A|1342
6VWM|1|2|G|1343
*
6VWM|1|2|C|1404
6VWM|1|2|U|1405
*
6VWM|1|2|A|1597
6VWM|1|2|A|1598
6VWM|1|2|U|1599
6VWM|1|2|C|1600
6VWM|1|2|G|1601
6VWM|1|2|U|1602
6VWM|1|2|A|1603
6VWM|1|2|C|1604

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34

Chain R

50S ribosomal protein L23