J4_6VWM_011

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CGGC*GUCCUAAGGUAG*CGAAUG

Length

25 nucleotides

Bulged bases

6VWM|1|2|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6VWM|1|2|C|1833
6VWM|1|2|U|1834
6VWM|1|2|G|1835
*
6VWM|1|2|C|1905
6VWM|1|2|G|1906
6VWM|1|2|G|1907
6VWM|1|2|C|1908
*
6VWM|1|2|G|1922
6VWM|1|2|U|1923
6VWM|1|2|C|1924
6VWM|1|2|C|1925
6VWM|1|2|U|1926
6VWM|1|2|A|1927
6VWM|1|2|A|1928
6VWM|1|2|G|1929
6VWM|1|2|G|1930
6VWM|1|2|U|1931
6VWM|1|2|A|1932
6VWM|1|2|G|1933
*
6VWM|1|2|C|1967
6VWM|1|2|G|1968
6VWM|1|2|A|1969
6VWM|1|2|A|1970
6VWM|1|2|U|1971
6VWM|1|2|G|1972

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 1

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain A

50S ribosomal protein L2