J4_6VYQ_007

3D structure

PDB id

6VYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing an 15 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYQ_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0511

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6VYQ|1|a|G|297
6VYQ|1|a|G|298
6VYQ|1|a|A|299
6VYQ|1|a|A|300
6VYQ|1|a|G|301
*
6VYQ|1|a|C|316
6VYQ|1|a|G|317
6VYQ|1|a|C|318
6VYQ|1|a|G|319
*
6VYQ|1|a|C|323
6VYQ|1|a|A|324
6VYQ|1|a|G|325
*
6VYQ|1|a|C|337
6VYQ|1|a|G|338
6VYQ|1|a|U|339
6VYQ|1|a|A|340
6VYQ|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4