J4_6VYS_007

3D structure

PDB id

6VYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing a 21 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VYS_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0511

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6VYS|1|a|G|297
6VYS|1|a|G|298
6VYS|1|a|A|299
6VYS|1|a|A|300
6VYS|1|a|G|301
*
6VYS|1|a|C|316
6VYS|1|a|G|317
6VYS|1|a|C|318
6VYS|1|a|G|319
*
6VYS|1|a|C|323
6VYS|1|a|A|324
6VYS|1|a|G|325
*
6VYS|1|a|C|337
6VYS|1|a|G|338
6VYS|1|a|U|339
6VYS|1|a|A|340
6VYS|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4