J4_6VZ2_007

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ2_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0512

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6VZ2|1|a|G|297
6VZ2|1|a|G|298
6VZ2|1|a|A|299
6VZ2|1|a|A|300
6VZ2|1|a|G|301
*
6VZ2|1|a|C|316
6VZ2|1|a|G|317
6VZ2|1|a|C|318
6VZ2|1|a|G|319
*
6VZ2|1|a|C|323
6VZ2|1|a|A|324
6VZ2|1|a|G|325
*
6VZ2|1|a|C|337
6VZ2|1|a|G|338
6VZ2|1|a|U|339
6VZ2|1|a|A|340
6VZ2|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4