J4_6VZ2_010

3D structure

PDB id

6VZ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex D1 (TTC-D1) containing mRNA with a 27 nt long spacer, NusG, and fMet-tRNAs at E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6VZ2|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZ2_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0703

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VZ2|1|a|G|1310
6VZ2|1|a|G|1311
6VZ2|1|a|U|1312
6VZ2|1|a|U|1313
6VZ2|1|a|C|1314
*
6VZ2|1|a|G|1338
6VZ2|1|a|G|1339
6VZ2|1|a|U|1340
6VZ2|1|a|G|1341
6VZ2|1|a|A|1342
6VZ2|1|a|G|1343
*
6VZ2|1|a|C|1404
6VZ2|1|a|U|1405
*
6VZ2|1|a|A|1597
6VZ2|1|a|A|1598
6VZ2|1|a|U|1599
6VZ2|1|a|C|1600
6VZ2|1|a|G|1601
6VZ2|1|a|U|1602
6VZ2|1|a|A|1603
6VZ2|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34