J4_6VZJ_010

3D structure

PDB id

6VZJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation complex A1 (TTC-A1) containing mRNA with a 15 nt long spacer, fMet-tRNAs at E-site and P-site, and lacking transcription factor NusG

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6VZJ|1|a|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6VZJ_010 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0703

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6VZJ|1|a|G|1310
6VZJ|1|a|G|1311
6VZJ|1|a|U|1312
6VZJ|1|a|U|1313
6VZJ|1|a|C|1314
*
6VZJ|1|a|G|1338
6VZJ|1|a|G|1339
6VZJ|1|a|U|1340
6VZJ|1|a|G|1341
6VZJ|1|a|A|1342
6VZJ|1|a|G|1343
*
6VZJ|1|a|C|1404
6VZJ|1|a|U|1405
*
6VZJ|1|a|A|1597
6VZJ|1|a|A|1598
6VZJ|1|a|U|1599
6VZJ|1|a|C|1600
6VZJ|1|a|G|1601
6VZJ|1|a|U|1602
6VZJ|1|a|A|1603
6VZJ|1|a|C|1604

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L23

Chain m

50S ribosomal protein L34