J4_6WD7_008

3D structure

PDB id

6WD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6WD7|1|1|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WD7_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1386

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6WD7|1|1|C|1833
6WD7|1|1|U|1834
6WD7|1|1|G|1835
*
6WD7|1|1|C|1905
6WD7|1|1|G|1906
*
6WD7|1|1|C|1924
6WD7|1|1|C|1925
6WD7|1|1|U|1926
6WD7|1|1|A|1927
6WD7|1|1|A|1928
6WD7|1|1|G|1929
6WD7|1|1|G|1930
6WD7|1|1|U|1931
6WD7|1|1|A|1932
6WD7|1|1|G|1933
*
6WD7|1|1|C|1967
6WD7|1|1|G|1968
6WD7|1|1|A|1969
6WD7|1|1|A|1970
6WD7|1|1|U|1971
6WD7|1|1|G|1972

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2