J4_6WDA_004

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6WDA|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDA_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1061

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WDA|1|1|G|1310
6WDA|1|1|G|1311
6WDA|1|1|U|1312
6WDA|1|1|U|1313
6WDA|1|1|C|1314
*
6WDA|1|1|G|1338
6WDA|1|1|G|1339
6WDA|1|1|U|1340
6WDA|1|1|G|1341
6WDA|1|1|A|1342
6WDA|1|1|G|1343
*
6WDA|1|1|C|1404
6WDA|1|1|U|1405
*
6WDA|1|1|A|1597
6WDA|1|1|A|1598
6WDA|1|1|U|1599
6WDA|1|1|C|1600
6WDA|1|1|G|1601
6WDA|1|1|U|1602
6WDA|1|1|A|1603
6WDA|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23