J4_6WDA_015

3D structure

PDB id

6WDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure III-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

6WDA|1|6|U|47, 6WDA|1|6|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDA_015 not in the Motif Atlas

Homologous match to J4_9DFC_015

Geometric discrepancy: 0.3015

The information below is about J4_9DFC_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6WDA|1|6|G|7
6WDA|1|6|U|8
6WDA|1|6|G|9
6WDA|1|6|G|10
*
6WDA|1|6|C|25
6WDA|1|6|G|26
6WDA|1|6|U|27
*
6WDA|1|6|A|43
6WDA|1|6|A|44
6WDA|1|6|G|45
6WDA|1|6|G|46
6WDA|1|6|U|47
6WDA|1|6|C|48
6WDA|1|6|G|49
*
6WDA|1|6|C|65
6WDA|1|6|C|66

Current chains

Chain 6

tRNAfMet

Nearby chains

Chain C

50S ribosomal protein L33

Chain L

30S ribosomal protein S7