J4_6WDF_016
3D structure
- PDB id
- 6WDF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-A)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGGAG*CUCGUC*GAAGGUCG*CC
- Length
- 22 nucleotides
- Bulged bases
- 6WDF|1|5|U|8, 6WDF|1|5|U|47, 6WDF|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6WDF|1|5|G|7
6WDF|1|5|U|8
6WDF|1|5|G|9
6WDF|1|5|G|10
6WDF|1|5|A|11
6WDF|1|5|G|12
*
6WDF|1|5|C|23
6WDF|1|5|U|24
6WDF|1|5|C|25
6WDF|1|5|G|26
6WDF|1|5|U|27
6WDF|1|5|C|28
*
6WDF|1|5|G|42
6WDF|1|5|A|43
6WDF|1|5|A|44
6WDF|1|5|G|45
6WDF|1|5|G|46
6WDF|1|5|U|47
6WDF|1|5|C|48
6WDF|1|5|G|49
*
6WDF|1|5|C|65
6WDF|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L33
- Chain R
- 30S ribosomal protein S13
- Chain a
- 50S ribosomal protein L1
Coloring options: