J4_6WDG_016
3D structure
- PDB id
- 6WDG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Cognate Structure VI-B)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCG*CC
- Length
- 18 nucleotides
- Bulged bases
- 6WDG|1|5|U|8, 6WDG|1|5|U|47, 6WDG|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDG_016 not in the Motif Atlas
- Homologous match to J4_4V90_004
- Geometric discrepancy: 0.2922
- The information below is about J4_4V90_004
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_94519.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6WDG|1|5|G|7
6WDG|1|5|U|8
6WDG|1|5|G|9
6WDG|1|5|G|10
*
6WDG|1|5|C|25
6WDG|1|5|G|26
6WDG|1|5|U|27
6WDG|1|5|C|28
*
6WDG|1|5|G|42
6WDG|1|5|A|43
6WDG|1|5|A|44
6WDG|1|5|G|45
6WDG|1|5|G|46
6WDG|1|5|U|47
6WDG|1|5|C|48
6WDG|1|5|G|49
*
6WDG|1|5|C|65
6WDG|1|5|C|66
Current chains
- Chain 5
- tRNAfMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain C
- 50S ribosomal protein L33
- Chain R
- 30S ribosomal protein S13
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