J4_6WDK_004

3D structure

PDB id

6WDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

6WDK|1|1|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WDK_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.102

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WDK|1|1|G|1310
6WDK|1|1|G|1311
6WDK|1|1|U|1312
6WDK|1|1|U|1313
6WDK|1|1|C|1314
*
6WDK|1|1|G|1338
6WDK|1|1|G|1339
6WDK|1|1|U|1340
6WDK|1|1|G|1341
6WDK|1|1|A|1342
6WDK|1|1|G|1343
*
6WDK|1|1|C|1404
6WDK|1|1|U|1405
*
6WDK|1|1|A|1597
6WDK|1|1|A|1598
6WDK|1|1|U|1599
6WDK|1|1|C|1600
6WDK|1|1|G|1601
6WDK|1|1|U|1602
6WDK|1|1|A|1603
6WDK|1|1|C|1604

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain t

50S ribosomal protein L23