J4_6WDM_013
3D structure
- PDB id
- 6WDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM of elongating ribosome with EF-Tu*GTP elucidates tRNA proofreading (Non-cognate Structure V-B2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6WDM|1|3|C|576, 6WDM|1|3|A|815, 6WDM|1|3|C|817, 6WDM|1|3|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6WDM_013 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1135
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6WDM|1|3|G|575
6WDM|1|3|C|576
6WDM|1|3|G|577
*
6WDM|1|3|C|764
6WDM|1|3|G|765
6WDM|1|3|A|766
6WDM|1|3|A|767
6WDM|1|3|A|768
6WDM|1|3|G|769
*
6WDM|1|3|C|810
6WDM|1|3|C|811
6WDM|1|3|G|812
6WDM|1|3|U|813
6WDM|1|3|A|814
6WDM|1|3|A|815
6WDM|1|3|A|816
6WDM|1|3|C|817
6WDM|1|3|G|818
6WDM|1|3|A|819
6WDM|1|3|U|820
6WDM|1|3|G|821
*
6WDM|1|3|C|879
6WDM|1|3|C|880
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 30S ribosomal protein S8
- Chain Q
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
- Chain Z
- 30S ribosomal protein S21
Coloring options: