J4_6WDR_001

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUUAAAUC*GCCCU*GGGUAAC*GG

Length

23 nucleotides

Bulged bases

6WDR|1|2|A|622

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|C|99
6WDR|1|2|A|100
6WDR|1|2|U|101
6WDR|1|2|U|102
6WDR|1|2|A|103
6WDR|1|2|A|104
6WDR|1|2|A|105
6WDR|1|2|U|106
6WDR|1|2|C|107
*
6WDR|1|2|G|570
6WDR|1|2|C|571
6WDR|1|2|C|572
6WDR|1|2|C|573
6WDR|1|2|U|574
*
6WDR|1|2|G|618
6WDR|1|2|G|619
6WDR|1|2|G|620
6WDR|1|2|U|621
6WDR|1|2|A|622
6WDR|1|2|A|623
6WDR|1|2|C|624
*
6WDR|1|2|G|646
6WDR|1|2|G|647

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4-A

Chain I

40S ribosomal protein S8-A

Chain L

40S ribosomal protein S11-A

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1