J4_6WDR_002

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGUUAAAAAGCUCGUAGUUGA*UAAUAG*CAUUAAUCUAACCAUAAACUAUGC*GUUCU

Length

56 nucleotides

Bulged bases

6WDR|1|2|A|882, 6WDR|1|2|A|886, 6WDR|1|2|U|1110, 6WDR|1|2|A|1167, 6WDR|1|2|U|1168, 6WDR|1|2|C|1169, 6WDR|1|2|A|1175, 6WDR|1|2|U|1176, 6WDR|1|2|A|1178, 6WDR|1|2|C|1180, 6WDR|1|2|U|1181, 6WDR|1|2|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WDR|1|2|A|878
6WDR|1|2|G|879
6WDR|1|2|U|880
6WDR|1|2|U|881
6WDR|1|2|A|882
6WDR|1|2|A|883
6WDR|1|2|A|884
6WDR|1|2|A|885
6WDR|1|2|A|886
6WDR|1|2|G|887
6WDR|1|2|C|888
6WDR|1|2|U|889
6WDR|1|2|C|890
6WDR|1|2|G|891
6WDR|1|2|U|892
6WDR|1|2|A|893
6WDR|1|2|G|894
6WDR|1|2|U|895
6WDR|1|2|U|896
6WDR|1|2|G|897
6WDR|1|2|A|898
*
6WDR|1|2|U|1107
6WDR|1|2|A|1108
6WDR|1|2|A|1109
6WDR|1|2|U|1110
6WDR|1|2|A|1111
6WDR|1|2|G|1112
*
6WDR|1|2|C|1162
6WDR|1|2|A|1163
6WDR|1|2|U|1164
6WDR|1|2|U|1165
6WDR|1|2|A|1166
6WDR|1|2|A|1167
6WDR|1|2|U|1168
6WDR|1|2|C|1169
6WDR|1|2|U|1170
6WDR|1|2|A|1171
6WDR|1|2|A|1172
6WDR|1|2|C|1173
6WDR|1|2|C|1174
6WDR|1|2|A|1175
6WDR|1|2|U|1176
6WDR|1|2|A|1177
6WDR|1|2|A|1178
6WDR|1|2|A|1179
6WDR|1|2|C|1180
6WDR|1|2|U|1181
6WDR|1|2|A|1182
6WDR|1|2|U|1183
6WDR|1|2|G|1184
6WDR|1|2|C|1185
*
6WDR|1|2|G|1254
6WDR|1|2|U|1255
6WDR|1|2|U|1256
6WDR|1|2|C|1257
6WDR|1|2|U|1258

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain C

40S ribosomal protein S2

Chain H

40S ribosomal protein S7-A

Chain L

40S ribosomal protein S11-A

Chain N

40S ribosomal protein S13

Chain W

40S ribosomal protein S22-A

Chain X

40S ribosomal protein S23-A

Chain b

40S ribosomal protein S27-A