J4_6WNV_003

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

6WNV|1|3|C|576, 6WNV|1|3|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNV_003 not in the Motif Atlas

Homologous match to J4_5J7L_003

Geometric discrepancy: 0.0769

The information below is about J4_5J7L_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

6WNV|1|3|G|575
6WNV|1|3|C|576
6WNV|1|3|G|577
*
6WNV|1|3|C|764
6WNV|1|3|G|765
6WNV|1|3|A|766
6WNV|1|3|A|767
6WNV|1|3|A|768
6WNV|1|3|G|769
*
6WNV|1|3|C|810
6WNV|1|3|C|811
6WNV|1|3|G|812
6WNV|1|3|U|813
6WNV|1|3|A|814
6WNV|1|3|A|815
6WNV|1|3|A|816
6WNV|1|3|C|817
6WNV|1|3|G|818
6WNV|1|3|A|819
6WNV|1|3|U|820
6WNV|1|3|G|821
*
6WNV|1|3|C|879
6WNV|1|3|C|880

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 4

Large subunit ribosomal RNA; LSU rRNA

Chain M

30S ribosomal protein S8

Chain Q

30S ribosomal protein S12

Chain T

30S ribosomal protein S15

Chain V

30S ribosomal protein S17

Chain Z

30S ribosomal protein S21