3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
6WNV|1|4|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6WNV_005 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1802
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

6WNV|1|4|C|601
6WNV|1|4|A|602
6WNV|1|4|A|603
6WNV|1|4|G|604
*
6WNV|1|4|C|624
6WNV|1|4|G|625
6WNV|1|4|A|626
6WNV|1|4|A|627
6WNV|1|4|G|628
*
6WNV|1|4|C|635
6WNV|1|4|G|636
6WNV|1|4|A|637
6WNV|1|4|G|638
*
6WNV|1|4|C|650
6WNV|1|4|G|651
6WNV|1|4|U|652
6WNV|1|4|U|653
6WNV|1|4|A|654
6WNV|1|4|A|655
6WNV|1|4|G|656

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L35
Chain d
50S ribosomal protein L4
Chain l
50S ribosomal protein L15

Coloring options:


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