J4_6WNW_011

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6WNW|1|4|U|2099

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WNW_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.11

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6WNW|1|4|C|1961
6WNW|1|4|U|1962
6WNW|1|4|G|1963
*
6WNW|1|4|C|2033
6WNW|1|4|G|2034
*
6WNW|1|4|C|2052
6WNW|1|4|C|2053
6WNW|1|4|U|2054
6WNW|1|4|A|2055
6WNW|1|4|A|2056
6WNW|1|4|G|2057
6WNW|1|4|G|2058
6WNW|1|4|U|2059
6WNW|1|4|A|2060
6WNW|1|4|G|2061
*
6WNW|1|4|C|2095
6WNW|1|4|G|2096
6WNW|1|4|A|2097
6WNW|1|4|A|2098
6WNW|1|4|U|2099
6WNW|1|4|G|2100

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain b

50S ribosomal protein L2