J4_6WYV_002

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6WYV_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0915

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6WYV|1|I|G|297
6WYV|1|I|G|298
6WYV|1|I|A|299
6WYV|1|I|A|300
6WYV|1|I|G|301
*
6WYV|1|I|C|316
6WYV|1|I|G|317
6WYV|1|I|C|318
6WYV|1|I|G|319
*
6WYV|1|I|C|323
6WYV|1|I|A|324
6WYV|1|I|G|325
*
6WYV|1|I|C|337
6WYV|1|I|G|338
6WYV|1|I|U|339
6WYV|1|I|A|340
6WYV|1|I|C|341

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4