J4_6WYV_004

3D structure

PDB id

6WYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome bound to compounds 47 and VS1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AUAAGUAACGAUAAA*UC*GCUU*AGUGAAAUU

Length

30 nucleotides

Bulged bases

6WYV|1|I|G|1271, 6WYV|1|I|A|1272, 6WYV|1|I|U|1273, 6WYV|1|I|U|1647, 6WYV|1|I|A|2015

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WYV|1|I|A|1262
6WYV|1|I|U|1263
6WYV|1|I|A|1264
6WYV|1|I|A|1265
6WYV|1|I|G|1266
6WYV|1|I|U|1267
6WYV|1|I|A|1268
6WYV|1|I|A|1269
6WYV|1|I|C|1270
6WYV|1|I|G|1271
6WYV|1|I|A|1272
6WYV|1|I|U|1273
6WYV|1|I|A|1274
6WYV|1|I|A|1275
6WYV|1|I|A|1276
*
6WYV|1|I|U|1294
6WYV|1|I|C|1295
*
6WYV|1|I|G|1645
6WYV|1|I|C|1646
6WYV|1|I|U|1647
6WYV|1|I|U|1648
*
6WYV|1|I|A|2009
6WYV|1|I|G|2010
6WYV|1|I|U|2011
6WYV|1|I|G|2012
6WYV|1|I|A|2013
6WYV|1|I|A|2014
6WYV|1|I|A|2015
6WYV|1|I|U|2016
6WYV|1|I|U|2017

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L4