3D structure

PDB id
6XDR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli transcription-translation complex B (TTC-B) containing an 27 nt long mRNA spacer, NusG, and fMet-tRNAs at E-site and P-site
Experimental method
ELECTRON MICROSCOPY
Resolution
4.7 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XDR_007 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0511
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6XDR|1|a|G|297
6XDR|1|a|G|298
6XDR|1|a|A|299
6XDR|1|a|A|300
6XDR|1|a|G|301
*
6XDR|1|a|C|316
6XDR|1|a|G|317
6XDR|1|a|C|318
6XDR|1|a|G|319
*
6XDR|1|a|C|323
6XDR|1|a|A|324
6XDR|1|a|G|325
*
6XDR|1|a|C|337
6XDR|1|a|G|338
6XDR|1|a|U|339
6XDR|1|a|A|340
6XDR|1|a|C|341

Current chains

Chain a
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L24
Chain l
50S ribosomal protein L4

Coloring options:


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