3D structure

PDB id
6XHV (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
A(4SU)AG*CAG*CGU(7MG)UCC*GU
Length
16 nucleotides
Bulged bases
6XHV|1|1w|4SU|8, 6XHV|1|1w|U|47, 6XHV|1|1w|C|48
QA status
Modified nucleotides: 4SU, 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XHV_033 not in the Motif Atlas
Homologous match to J4_6UGG_002
Geometric discrepancy: 0.2634
The information below is about J4_6UGG_002
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_58311.1
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
30

Unit IDs

6XHV|1|1w|A|7
6XHV|1|1w|4SU|8
6XHV|1|1w|A|9
6XHV|1|1w|G|10
*
6XHV|1|1w|C|25
6XHV|1|1w|A|26
6XHV|1|1w|G|27
*
6XHV|1|1w|C|43
6XHV|1|1w|G|44
6XHV|1|1w|U|45
6XHV|1|1w|7MG|46
6XHV|1|1w|U|47
6XHV|1|1w|C|48
6XHV|1|1w|C|49
*
6XHV|1|1w|G|65
6XHV|1|1w|U|66

Current chains

Chain 1w
A-site tRNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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