J4_6XHW_018

3D structure

PDB id

6XHW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHW_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0886

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

6XHW|1|2A|C|297
6XHW|1|2A|G|298
6XHW|1|2A|A|299
6XHW|1|2A|A|300
6XHW|1|2A|G|301
*
6XHW|1|2A|C|316
6XHW|1|2A|G|317
6XHW|1|2A|C|318
6XHW|1|2A|C|319
*
6XHW|1|2A|G|323
6XHW|1|2A|A|324
6XHW|1|2A|G|325
*
6XHW|1|2A|C|337
6XHW|1|2A|G|338
6XHW|1|2A|U|339
6XHW|1|2A|A|340
6XHW|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24