J4_6XHX_002
3D structure
- PDB id
- 6XHX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- CGAAG*CGCC*GAG*CGUAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XHX_002 not in the Motif Atlas
- Homologous match to J4_9DFE_002
- Geometric discrepancy: 0.0568
- The information below is about J4_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_71729.5
- Basepair signature
- cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XHX|1|1A|C|297
6XHX|1|1A|G|298
6XHX|1|1A|A|299
6XHX|1|1A|A|300
6XHX|1|1A|G|301
*
6XHX|1|1A|C|316
6XHX|1|1A|G|317
6XHX|1|1A|C|318
6XHX|1|1A|C|319
*
6XHX|1|1A|G|323
6XHX|1|1A|A|324
6XHX|1|1A|G|325
*
6XHX|1|1A|C|337
6XHX|1|1A|G|338
6XHX|1|1A|U|339
6XHX|1|1A|A|340
6XHX|1|1A|G|341
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1F
- 50S ribosomal protein L4
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: