3D structure

PDB id
6XHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GAC*GC*GG*CC
Length
9 nucleotides
Bulged bases
6XHX|1|1A|A|1445
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XHX_006 not in the Motif Atlas
Homologous match to J4_9DFE_006
Geometric discrepancy: 0.0963
The information below is about J4_9DFE_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_24280.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6XHX|1|1A|G|1444
6XHX|1|1A|A|1445
6XHX|1|1A|C|1445|||A
*
6XHX|1|1A|G|1466
6XHX|1|1A|C|1467
*
6XHX|1|1A|G|1525
6XHX|1|1A|G|1526
*
6XHX|1|1A|C|1546
6XHX|1|1A|C|1547

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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