J4_6XHX_020

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

GACUG*CACAG*CGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHX_020 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0485

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6XHX|1|2A|G|1772
6XHX|1|2A|A|1773
6XHX|1|2A|C|1774
6XHX|1|2A|U|1775
6XHX|1|2A|G|1776
*
6XHX|1|2A|C|1788
6XHX|1|2A|A|1789
6XHX|1|2A|C|1790
6XHX|1|2A|A|1791
6XHX|1|2A|G|1792
*
6XHX|1|2A|C|1827
6XHX|1|2A|G|1828
6XHX|1|2A|A|1829
6XHX|1|2A|C|1830
*
6XHX|1|2A|G|1975
6XHX|1|2A|U|1976
6XHX|1|2A|A|1977
6XHX|1|2A|A|1978
6XHX|1|2A|C|1979

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA