J4_6XHX_021

3D structure

PDB id

6XHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with erythromycin and protein Y (YfiA) at 2.55A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6XHX|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHX_021 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0583

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6XHX|1|2A|U|1833
6XHX|1|2A|U|1834
6XHX|1|2A|G|1835
*
6XHX|1|2A|C|1905
6XHX|1|2A|G|1906
*
6XHX|1|2A|C|1924
6XHX|1|2A|C|1925
6XHX|1|2A|U|1926
6XHX|1|2A|A|1927
6XHX|1|2A|A|1928
6XHX|1|2A|G|1929
6XHX|1|2A|G|1930
6XHX|1|2A|U|1931
6XHX|1|2A|A|1932
6XHX|1|2A|G|1933
*
6XHX|1|2A|C|1967
6XHX|1|2A|G|1968
6XHX|1|2A|A|1969
6XHX|1|2A|A|1970
6XHX|1|2A|A|1971
6XHX|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA