J4_6XHY_018

3D structure

PDB id

6XHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with telithromycin, mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAAG*CGCC*GAG*CGUAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XHY_018 not in the Motif Atlas

Homologous match to J4_9DFE_002

Geometric discrepancy: 0.0797

The information below is about J4_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

6XHY|1|2A|C|297
6XHY|1|2A|G|298
6XHY|1|2A|A|299
6XHY|1|2A|A|300
6XHY|1|2A|G|301
*
6XHY|1|2A|C|316
6XHY|1|2A|G|317
6XHY|1|2A|C|318
6XHY|1|2A|C|319
*
6XHY|1|2A|G|323
6XHY|1|2A|A|324
6XHY|1|2A|G|325
*
6XHY|1|2A|C|337
6XHY|1|2A|G|338
6XHY|1|2A|U|339
6XHY|1|2A|A|340
6XHY|1|2A|G|341

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2F

50S ribosomal protein L4

Chain 2Y

50S ribosomal protein L24