J4_6XQD_007
3D structure
- PDB id
- 6XQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UUC-mRNA, and deacylated P-site tRNA at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GACUG*CACAG*CGAC*GUAAC
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XQD_007 not in the Motif Atlas
- Homologous match to J4_9DFE_007
- Geometric discrepancy: 0.0439
- The information below is about J4_9DFE_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61477.5
- Basepair signature
- cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XQD|1|1A|G|1772
6XQD|1|1A|A|1773
6XQD|1|1A|C|1774
6XQD|1|1A|U|1775
6XQD|1|1A|G|1776
*
6XQD|1|1A|C|1788
6XQD|1|1A|A|1789
6XQD|1|1A|C|1790
6XQD|1|1A|A|1791
6XQD|1|1A|G|1792
*
6XQD|1|1A|C|1827
6XQD|1|1A|G|1828
6XQD|1|1A|A|1829
6XQD|1|1A|C|1830
*
6XQD|1|1A|G|1975
6XQD|1|1A|U|1976
6XQD|1|1A|A|1977
6XQD|1|1A|A|1978
6XQD|1|1A|C|1979
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 1D
- 50S ribosomal protein L2
- Chain 1a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: