J4_6XQE_003

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

6XQE|1|1A|G|1271, 6XQE|1|1A|A|1272, 6XQE|1|1A|U|1273, 6XQE|1|1A|G|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQE_003 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.0819

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6XQE|1|1A|C|1270
6XQE|1|1A|G|1271
6XQE|1|1A|A|1272
6XQE|1|1A|U|1273
6XQE|1|1A|A|1274
6XQE|1|1A|A|1275
6XQE|1|1A|A|1276
*
6XQE|1|1A|U|1294
6XQE|1|1A|C|1295
*
6XQE|1|1A|G|1645
6XQE|1|1A|C|1646
6XQE|1|1A|G|1647
6XQE|1|1A|C|1648
*
6XQE|1|1A|G|2009
6XQE|1|1A|G|2010

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1R

50S ribosomal protein L17

Chain 1W

50S ribosomal protein L22