J4_6XQE_013
3D structure
- PDB id
- 6XQE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGUAAAGGG*CGAAAG*CCCUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 6XQE|1|1a|A|572, 6XQE|1|1a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6XQE|1|1a|C|569
6XQE|1|1a|G|570
6XQE|1|1a|U|571
6XQE|1|1a|A|572
6XQE|1|1a|A|573
6XQE|1|1a|A|574
6XQE|1|1a|G|575
6XQE|1|1a|G|576
6XQE|1|1a|G|577
*
6XQE|1|1a|C|764
6XQE|1|1a|G|765
6XQE|1|1a|A|766
6XQE|1|1a|A|767
6XQE|1|1a|A|768
6XQE|1|1a|G|769
*
6XQE|1|1a|C|810
6XQE|1|1a|C|811
6XQE|1|1a|C|812
6XQE|1|1a|U|813
6XQE|1|1a|A|814
6XQE|1|1a|A|815
6XQE|1|1a|A|816
6XQE|1|1a|C|817
6XQE|1|1a|G|818
6XQE|1|1a|A|819
6XQE|1|1a|U|820
6XQE|1|1a|G|821
*
6XQE|1|1a|C|879
6XQE|1|1a|C|880
6XQE|1|1a|G|881
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1e
- 30S ribosomal protein S5
- Chain 1h
- 30S ribosomal protein S8
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
Coloring options: