J4_6XQE_022

3D structure

PDB id

6XQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUG*CG*CCUAAGGUAG*CGAAAA

Length

21 nucleotides

Bulged bases

6XQE|1|2A|A|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XQE_022 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0833

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6XQE|1|2A|U|1833
6XQE|1|2A|U|1834
6XQE|1|2A|G|1835
*
6XQE|1|2A|C|1905
6XQE|1|2A|G|1906
*
6XQE|1|2A|C|1924
6XQE|1|2A|C|1925
6XQE|1|2A|U|1926
6XQE|1|2A|A|1927
6XQE|1|2A|A|1928
6XQE|1|2A|G|1929
6XQE|1|2A|G|1930
6XQE|1|2A|U|1931
6XQE|1|2A|A|1932
6XQE|1|2A|G|1933
*
6XQE|1|2A|C|1967
6XQE|1|2A|G|1968
6XQE|1|2A|A|1969
6XQE|1|2A|A|1970
6XQE|1|2A|A|1971
6XQE|1|2A|A|1972

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2x

Transfer RNA; tRNA