J4_6XYW_002

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CGAUAAA*UC*GCUUG*CGG

Length

17 nucleotides

Bulged bases

6XYW|1|1|G|1427, 6XYW|1|1|A|1428, 6XYW|1|1|U|1429, 6XYW|1|1|A|1430, 6XYW|1|1|A|1431, 6XYW|1|1|C|1981, 6XYW|1|1|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|C|1426
6XYW|1|1|G|1427
6XYW|1|1|A|1428
6XYW|1|1|U|1429
6XYW|1|1|A|1430
6XYW|1|1|A|1431
6XYW|1|1|A|1432
*
6XYW|1|1|U|1450
6XYW|1|1|C|1451
*
6XYW|1|1|G|1980
6XYW|1|1|C|1981
6XYW|1|1|U|1982
6XYW|1|1|U|1983
6XYW|1|1|G|1984
*
6XYW|1|1|C|2319
6XYW|1|1|G|2320
6XYW|1|1|G|2321

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain AB

At1g26740/T24P13_11

Chain AN

At3g51010

Chain An

At5g09770

Chain As

AT1G52370 protein