J4_6XYW_004
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6XYW|1|1|U|2282
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XYW_004 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1207
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6XYW|1|1|C|2150
6XYW|1|1|U|2151
6XYW|1|1|G|2152
*
6XYW|1|1|C|2216
6XYW|1|1|G|2217
*
6XYW|1|1|C|2235
6XYW|1|1|C|2236
6XYW|1|1|U|2237
6XYW|1|1|A|2238
6XYW|1|1|A|2239
6XYW|1|1|G|2240
6XYW|1|1|G|2241
6XYW|1|1|U|2242
6XYW|1|1|A|2243
6XYW|1|1|G|2244
*
6XYW|1|1|C|2278
6XYW|1|1|G|2279
6XYW|1|1|A|2280
6XYW|1|1|A|2281
6XYW|1|1|U|2282
6XYW|1|1|G|2283
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Ab
- Expressed protein
- Chain BB
- mS38
Coloring options: