J4_6XYW_006

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

GGAGC*GG*UAUG*CUUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|1|G|2944
6XYW|1|1|G|2945
6XYW|1|1|A|2946
6XYW|1|1|G|2947
6XYW|1|1|C|2948
*
6XYW|1|1|G|2976
6XYW|1|1|G|2977
*
6XYW|1|1|U|3034
6XYW|1|1|A|3035
6XYW|1|1|U|3036
6XYW|1|1|G|3037
*
6XYW|1|1|C|3064
6XYW|1|1|U|3065
6XYW|1|1|U|3066
6XYW|1|1|C|3067

Current chains

Chain 1

RNA (2842-MER)

Nearby chains

Chain Ac

50S ribosomal protein L3-2, mitochondrial

Chain Aj

At1g01640

Chain Ak

50S ribosomal protein HLP, mitochondrial