J4_6XYW_008
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- GGG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 6XYW|1|2|G|573, 6XYW|1|2|A|812, 6XYW|1|2|G|815, 6XYW|1|2|U|817
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XYW_008 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.1331
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|2|G|572
6XYW|1|2|G|573
6XYW|1|2|G|574
*
6XYW|1|2|C|760
6XYW|1|2|G|761
6XYW|1|2|A|762
6XYW|1|2|A|763
6XYW|1|2|A|764
6XYW|1|2|G|765
*
6XYW|1|2|C|807
6XYW|1|2|C|808
6XYW|1|2|G|809
6XYW|1|2|U|810
6XYW|1|2|A|811
6XYW|1|2|A|812
6XYW|1|2|A|813
6XYW|1|2|C|814
6XYW|1|2|G|815
6XYW|1|2|A|816
6XYW|1|2|U|817
6XYW|1|2|G|818
*
6XYW|1|2|C|872
6XYW|1|2|C|873
Current chains
- Chain 2
- RNA (1743-MER)
Nearby chains
- Chain BB
- mS38
- Chain Bg
- 40S ribosomal protein S15a-5
- Chain Bk
- Ribosomal protein S12, mitochondrial
- Chain Bn
- At1g15810/F7H2_23
- Chain Bp
- Nucleic acid-binding, OB-fold-like protein
- Chain Bs
- Ribosomal protein S21 family protein
Coloring options: