J4_6XYW_009

3D structure

PDB id

6XYW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the plant mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

CUAAGGAGAAAGG*CCGAAGUGAGCCAAGGAG*CAUUCAGGCGAGCCGCCCGGUGGUGUGG*CCUGCCAAAACGGCUCCGAAACAAACAAAAAG

Length

91 nucleotides

Bulged bases

6XYW|1|2|A|1139, 6XYW|1|2|G|1159, 6XYW|1|2|U|1160, 6XYW|1|2|A|1410, 6XYW|1|2|C|1413, 6XYW|1|2|A|1460, 6XYW|1|2|C|1463, 6XYW|1|2|C|1466, 6XYW|1|2|A|1475, 6XYW|1|2|A|1479, 6XYW|1|2|A|1480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6XYW|1|2|C|1133
6XYW|1|2|U|1134
6XYW|1|2|A|1135
6XYW|1|2|A|1136
6XYW|1|2|G|1137
6XYW|1|2|G|1138
6XYW|1|2|A|1139
6XYW|1|2|G|1140
6XYW|1|2|A|1141
6XYW|1|2|A|1142
6XYW|1|2|A|1143
6XYW|1|2|G|1144
6XYW|1|2|G|1145
*
6XYW|1|2|C|1154
6XYW|1|2|C|1155
6XYW|1|2|G|1156
6XYW|1|2|A|1157
6XYW|1|2|A|1158
6XYW|1|2|G|1159
6XYW|1|2|U|1160
6XYW|1|2|G|1161
6XYW|1|2|A|1162
6XYW|1|2|G|1163
6XYW|1|2|C|1164
6XYW|1|2|C|1165
6XYW|1|2|A|1166
6XYW|1|2|A|1167
6XYW|1|2|G|1168
6XYW|1|2|G|1169
6XYW|1|2|A|1170
6XYW|1|2|G|1171
*
6XYW|1|2|C|1400
6XYW|1|2|A|1401
6XYW|1|2|U|1402
6XYW|1|2|U|1403
6XYW|1|2|C|1404
6XYW|1|2|A|1405
6XYW|1|2|G|1406
6XYW|1|2|G|1407
6XYW|1|2|C|1408
6XYW|1|2|G|1409
6XYW|1|2|A|1410
6XYW|1|2|G|1411
6XYW|1|2|C|1412
6XYW|1|2|C|1413
6XYW|1|2|G|1414
6XYW|1|2|C|1415
6XYW|1|2|C|1416
6XYW|1|2|C|1417
6XYW|1|2|G|1418
6XYW|1|2|G|1419
6XYW|1|2|U|1420
6XYW|1|2|G|1421
6XYW|1|2|G|1422
6XYW|1|2|U|1423
6XYW|1|2|G|1424
6XYW|1|2|U|1425
6XYW|1|2|G|1426
6XYW|1|2|G|1427
*
6XYW|1|2|C|1453
6XYW|1|2|C|1454
6XYW|1|2|U|1455
6XYW|1|2|G|1456
6XYW|1|2|C|1457
6XYW|1|2|C|1458
6XYW|1|2|A|1459
6XYW|1|2|A|1460
6XYW|1|2|A|1461
6XYW|1|2|A|1462
6XYW|1|2|C|1463
6XYW|1|2|G|1464
6XYW|1|2|G|1465
6XYW|1|2|C|1466
6XYW|1|2|U|1467
6XYW|1|2|C|1468
6XYW|1|2|C|1469
6XYW|1|2|G|1470
6XYW|1|2|A|1471
6XYW|1|2|A|1472
6XYW|1|2|A|1473
6XYW|1|2|C|1474
6XYW|1|2|A|1475
6XYW|1|2|A|1476
6XYW|1|2|A|1477
6XYW|1|2|C|1478
6XYW|1|2|A|1479
6XYW|1|2|A|1480
6XYW|1|2|A|1481
6XYW|1|2|A|1482
6XYW|1|2|A|1483
6XYW|1|2|G|1484

Current chains

Chain 2

RNA (1743-MER)

Nearby chains

Chain BG

Pentatricopeptide repeat-containing protein At3g02650, mitochondrial

Chain BK

rPPR*

Chain Bw

Mitochondrial 28S ribosomal protein S29-like protein

Chain Bx

37S ribosomal protein S27

Chain Bz

AT3G18240 protein