J4_6XYW_010
3D structure
- PDB id
- 6XYW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the plant mitochondrial ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.86 Å
Loop
- Sequence
- CGAUAAA*UC*GCUU*GG
- Length
- 15 nucleotides
- Bulged bases
- 6XYW|1|1|G|1427, 6XYW|1|1|A|1428, 6XYW|1|1|U|1429, 6XYW|1|1|A|1430, 6XYW|1|1|A|1431, 6XYW|1|1|C|1981, 6XYW|1|1|U|1982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6XYW_010 not in the Motif Atlas
- Homologous match to J4_9DFE_003
- Geometric discrepancy: 0.2887
- The information below is about J4_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.6
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6XYW|1|1|C|1426
6XYW|1|1|G|1427
6XYW|1|1|A|1428
6XYW|1|1|U|1429
6XYW|1|1|A|1430
6XYW|1|1|A|1431
6XYW|1|1|A|1432
*
6XYW|1|1|U|1450
6XYW|1|1|C|1451
*
6XYW|1|1|G|1980
6XYW|1|1|C|1981
6XYW|1|1|U|1982
6XYW|1|1|U|1983
*
6XYW|1|1|G|2320
6XYW|1|1|G|2321
Current chains
- Chain 1
- RNA (2842-MER)
Nearby chains
- Chain AB
- At1g26740/T24P13_11
- Chain AN
- At3g51010
- Chain An
- At5g09770
- Chain As
- AT1G52370 protein
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