3D structure

PDB id
6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGAAG*CGCG*CAG*CGUAC
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6XZ7_002 not in the Motif Atlas
Homologous match to J4_5J7L_019
Geometric discrepancy: 0.0464
The information below is about J4_5J7L_019
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

6XZ7|1|A|G|297
6XZ7|1|A|G|298
6XZ7|1|A|A|299
6XZ7|1|A|A|300
6XZ7|1|A|G|301
*
6XZ7|1|A|C|316
6XZ7|1|A|G|317
6XZ7|1|A|C|318
6XZ7|1|A|G|319
*
6XZ7|1|A|C|323
6XZ7|1|A|A|324
6XZ7|1|A|G|325
*
6XZ7|1|A|C|337
6XZ7|1|A|G|338
6XZ7|1|A|U|339
6XZ7|1|A|A|340
6XZ7|1|A|C|341

Current chains

Chain A
23S rRNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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