J4_6XZ7_009

3D structure

PDB id

6XZ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CU(2MG)*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6XZ7|1|A|U|1971

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZ7_009 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.0865

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6XZ7|1|A|C|1833
6XZ7|1|A|U|1834
6XZ7|1|A|2MG|1835
*
6XZ7|1|A|C|1905
6XZ7|1|A|G|1906
*
6XZ7|1|A|C|1924
6XZ7|1|A|C|1925
6XZ7|1|A|U|1926
6XZ7|1|A|A|1927
6XZ7|1|A|A|1928
6XZ7|1|A|G|1929
6XZ7|1|A|G|1930
6XZ7|1|A|U|1931
6XZ7|1|A|A|1932
6XZ7|1|A|G|1933
*
6XZ7|1|A|C|1967
6XZ7|1|A|G|1968
6XZ7|1|A|A|1969
6XZ7|1|A|A|1970
6XZ7|1|A|U|1971
6XZ7|1|A|G|1972

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain f

Transfer RNA; tRNA