J4_6XZB_006

3D structure

PDB id

6XZB (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

6XZB|1|A2|U|653, 6XZB|1|A2|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6XZB_006 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.1827

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

6XZB|1|A2|C|601
6XZB|1|A2|A|602
6XZB|1|A2|A|603
6XZB|1|A2|G|604
*
6XZB|1|A2|C|624
6XZB|1|A2|G|625
6XZB|1|A2|A|626
6XZB|1|A2|A|627
6XZB|1|A2|G|628
*
6XZB|1|A2|C|635
6XZB|1|A2|G|636
6XZB|1|A2|A|637
6XZB|1|A2|G|638
*
6XZB|1|A2|C|650
6XZB|1|A2|G|651
6XZB|1|A2|U|652
6XZB|1|A2|U|653
6XZB|1|A2|A|654
6XZB|1|A2|A|655
6XZB|1|A2|G|656

Current chains

Chain A2

23S rRNA

Nearby chains

Chain E2

50S ribosomal protein L4

Chain L2

50S ribosomal protein L15

Chain d2

50S ribosomal protein L35